PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009791858.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 249aa MW: 28451.8 Da PI: 9.6179

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009791858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.2e-11	80	128	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++ +++Lr l+P+ +K s ++ Le+ v+YIk++ XP_009791858.1 80 VRRDVERQRRRDMARLYQRLRLLIPSkY---LMGKRSISDHLEEIVDYIKDM 128 56789*******************77...9****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-10	75	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.265	76	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-8	78	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-8	80	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDDSDQFDYA QVEHLLHLLS SSPSPPPPLT TNSPVPLQTQ SCNLFNTPVP KRKTVIANID 60 QDTGKGKPPK EKENSEKKVV RRDVERQRRR DMARLYQRLR LLIPSKYLMG KRSISDHLEE 120 IVDYIKDMRK NIEELETKRE KLKEMRNICS SDHNSHLAAP SSSRKSDDNQ DRIIVKKCKE 180 GVLEISVIST LGGVLALSKV LRVLMEEELL VISCVSSKIN QRSLHIIQSE VNSRGDIDLA 240 RLQFKLMSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791858.1	0.0	PREDICTED: transcription factor bHLH120-like
Refseq	XP_016441896.1	0.0	PREDICTED: transcription factor bHLH120-like
TrEMBL	A0A1S3XPP6	1e-180	A0A1S3XPP6_TOBAC; transcription factor bHLH120-like
TrEMBL	A0A1U7XLT4	1e-180	A0A1U7XLT4_NICSY; transcription factor bHLH120-like
STRING	XP_009791858.1	1e-180	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12831	11	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	5e-14	bHLH family protein