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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009791936.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | B3 | ||||||||
| Protein Properties | Length: 332aa MW: 38236.8 Da PI: 4.4295 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 35.9 | 1.3e-11 | 48 | 129 | 3 | 93 |
EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
k+l s +g+l +p+k a ++ +++ +l+ d++ ++ +v+l + ++y++t+ W++Fv++++Lk +D vv++ +++++ l+
XP_009791936.1 48 KQL--SEDDITGQLQIPRKLA-HYlQSP-----ELQSADLDEQECQVELVRNMEEDEYYMTGEWENFVQEHQLKPKDLVVIEISDNQR--LR 129
555..44444567*******9.663433.....689999**********88888888*************************765433..35 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 1.9E-10 | 42 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.63E-8 | 42 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.74E-8 | 45 | 130 | No hit | No description |
| Pfam | PF02362 | 1.0E-9 | 49 | 130 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 8.8E-5 | 176 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.28E-6 | 179 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 332 aa Download sequence Send to blast |
MAANEICDNF QDIHLSDKSR SASLKIKCNP FGTAWVYRDE NRKLFLEKQL SEDDITGQLQ 60 IPRKLAHYLQ SPELQSADLD EQECQVELVR NMEEDEYYMT GEWENFVQEH QLKPKDLVVI 120 EISDNQRLRV DYISDHRAID NHVLVRRLSR AEVKDLYLRK LSENYSYCGT GLIEIQPVVE 180 MKLCSENADS VKLILPKKEV EENLNDLPLP AVGGEIPLTL FDPVGNNIVE MKLVHGSEED 240 GYYIGGGEWK EYAVKHNLLT SDTLFLDKVI VHNDEHELNN HYEITYQRGS SKEREKLDAA 300 AATTTVVIGD NKKGDDQSEY EGDLESFWLW LV |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009791936.1 | 0.0 | PREDICTED: uncharacterized protein LOC104239104 | ||||
| TrEMBL | A0A1U7XQN4 | 0.0 | A0A1U7XQN4_NICSY; uncharacterized protein LOC104239104 | ||||
| STRING | XP_009791936.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA14354 | 3 | 4 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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