PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009791938.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 285aa MW: 32538.3 Da PI: 4.5129

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009791938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.9	4.7e-10	125	215	2	84
EEE-..-HHHHT...T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 2 fkvltpsdvlks...grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f++ ++++ l++ g l lp k ++++ +g++ + ltl d +g +W++ + ks++y+l++ W ++v+ +Lk+ D+++++ XP_009791938.1 125 FSKRLTKYDLNRsfgGGLKLPLKLVTDNilvhisapaDGDEGK--PLTLVDHEGGKWDMLF--VLKSKKYYLRGEWYNYVEKYELKDSDTIIIEK 215 444444555554477889********999999988777555..5*************..888999*********************993 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.9E-12	119	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.51E-11	123	216	No hit	No description
SuperFamily	SSF101936	4.71E-13	123	220	IPR015300	DNA-binding pseudobarrel domain

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSNQQRDKEA QTQEVDDRER DATMAPTVTK AIFHYLSDDD QEDHPITKKL RTAGSFQIND 60 CNLMIKNVSD ATVDPRDLVH EAILEKVRNE EPIITNEERI EDHTLQLTAK SGGQMITSTK 120 REKFFSKRLT KYDLNRSFGG GLKLPLKLVT DNILVHISAP ADGDEGKPLT LVDHEGGKWD 180 MLFVLKSKKY YLRGEWYNYV EKYELKDSDT IIIEKITISK EQVKEVVGFA AVNQIGDHDW 240 DTICKDQQIE TKDIGKAEVA YEITIERGPE NTVTEQEDDD SGDEE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791938.1	0.0	PREDICTED: uncharacterized protein LOC104239105
TrEMBL	A0A1U7XM16	0.0	A0A1U7XM16_NICSY; uncharacterized protein LOC104239105
STRING	XP_009791938.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14765	2	3