PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009792035.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 187aa MW: 20640.4 Da PI: 8.4986

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009792035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	220.5	4.9e-68	8	161	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ssse+vCyv+CnfCntilavsvP + ++++vtvrCGhC++llsvn+ q l+ ++ ++ + +++++++ ++s++++++ XP_009792035.1 8 SSSSERVCYVHCNFCNTILAVSVPCSGIMTIVTVRCGHCANLLSVNIGSLLQSLPLQDL-------QQRSNIEDASKAFG-----SSSSTNYHRF 90 6899*************************************************9994.......22333334444444.....3444555555 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + ++ +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdi+hreafs+aaknWahfP+ihfgl XP_009792035.1 91 SAIGTSPEDDQPRTMP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 161 5666777778888888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.0E-73	10	161	IPR006780	YABBY protein
SuperFamily	SSF47095	6.02E-9	100	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.4E-5	110	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSLDITYSSS SERVCYVHCN FCNTILAVSV PCSGIMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQDLQQRS NIEDASKAFG SSSSTNYHRF SAIGTSPEDD QPRTMPIRPP EKRQRVPSAY 120 NRFIKEEIQR IKASNPDITH REAFSTAAKN WAHFPHIHFG LKLEGNKQAK LDHAVAGEGP 180 QKSIGLC

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667765	1e-134	KJ667765.1 Solanum melongena YAB2 protein mRNA, partial cds.
GenBank	KJ667766	1e-134	KJ667766.1 Solanum sisymbriifolium YAB2 protein mRNA, partial cds.
GenBank	KJ667768	1e-134	KJ667768.1 Solanum aethiopicum YAB2 protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792035.1	1e-139	PREDICTED: axial regulator YABBY 5-like isoform X3
Swissprot	Q9XFB0	4e-71	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1U7XZU8	1e-138	A0A1U7XZU8_NICSY; axial regulator YABBY 5-like isoform X3
STRING	XP_009792033.1	1e-137	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-70	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]