PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009792037.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 169aa MW: 18665.3 Da PI: 9.6984

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009792037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	188.4	3.7e-58	5	143	21	170
YABBY 21 ilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppv 115 i vsvP + ++++vtvrCGhC++llsvn+ q l+ ++ l+++ + ++ + +++ ++s++++++ + + ++ +++ pr+ p XP_009792037.1 5 ITHVSVPCSGIMTIVTVRCGHCANLLSVNIGSLLQSLPLQD-LQKQQRSNIEDAS----KAFG-----SSSSTNYHRFSAIGTSPEDDQPRTMP- 88 668*********************************999.5555444444433....3333.....34445555555666677777788777. PP YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 irPPekrqrvPsaynrfikeeiqrikasnPdi+hreafs+aaknWahfP+ihfgl XP_009792037.1 89 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 143 9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.5E-60	5	143	IPR006780	YABBY protein
SuperFamily	SSF47095	4.84E-9	82	136	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.5E-5	92	135	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MLIVITHVSV PCSGIMTIVT VRCGHCANLL SVNIGSLLQS LPLQDLQKQQ RSNIEDASKA 60 FGSSSSTNYH RFSAIGTSPE DDQPRTMPIR PPEKRQRVPS AYNRFIKEEI QRIKASNPDI 120 THREAFSTAA KNWAHFPHIH FGLKLEGNKQ AKLDHAVAGE GPQKSIGLC

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792037.1	1e-125	PREDICTED: putative axial regulator YABBY 2 isoform X5
Swissprot	Q9XFB0	7e-59	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1U7XJ06	1e-123	A0A1U7XJ06_NICSY; putative axial regulator YABBY 2 isoform X5
STRING	XP_009792033.1	1e-119	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	6e-57	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]