PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792377.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 193aa    MW: 22741.2 Da    PI: 4.1906
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792377.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.93e-3081261128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGf F+Ptdeel+++yLk kv+g ++  +  i+++d  +++P++L++k+  ++++wyfFs+ +        +nrat++gyWk+   +++++ +
  XP_009792377.1   8 LPPGFCFDPTDEELIMYYLKSKVAGLPFYPSINIPHLDFSSSDPSQLNEKALWSKNQWYFFSQVN--------ENRATRKGYWKEGHMNEPIILE 94 
                     79*************************888788**************977777899******975........589999*************999 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ vg+kk + +y+ +    ++t+W+m+e++l
  XP_009792377.1  95 nfGEKMVGIKKYFGYYNID---EVQTNWIMEEFHL 126
                     889999**********544...467********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-375150IPR003441NAC domain
PROSITE profilePS5100536.3958152IPR003441NAC domain
PfamPF023653.1E-229126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEDERVGLPP GFCFDPTDEE LIMYYLKSKV AGLPFYPSIN IPHLDFSSSD PSQLNEKALW  60
SKNQWYFFSQ VNENRATRKG YWKEGHMNEP IILENFGEKM VGIKKYFGYY NIDEVQTNWI  120
MEEFHLASSN SFKKPSKNEN ETEWVLCRVH ESNNQSQGIN WLYRNCDDEV ELSALDEVFL  180
SMDDDEEEEI SFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-23515714170NO APICAL MERISTEM PROTEIN
1ut4_B6e-23515714170NO APICAL MERISTEM PROTEIN
1ut7_A6e-23515714170NO APICAL MERISTEM PROTEIN
1ut7_B6e-23515714170NO APICAL MERISTEM PROTEIN
4dul_A6e-23515714170NAC domain-containing protein 19
4dul_B6e-23515714170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792377.11e-142PREDICTED: NAC transcription factor NAM-B2-like
RefseqXP_016494086.11e-142PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A1S4BYV51e-141A0A1S4BYV5_TOBAC; NAC domain-containing protein 104-like
TrEMBLA0A1U7XJZ31e-141A0A1U7XJZ3_NICSY; NAC transcription factor NAM-B2-like
STRINGXP_009792377.11e-142(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137851215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-40xylem NAC domain 1