PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792432.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 345aa    MW: 40177.3 Da    PI: 7.1833
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.68e-1939121286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt+qe+  Li+a++e++ +l++g+lk+ +Weev++ + ++ gf   ++s++qC++k+e+l+kry++++           ++++yfd ++
  XP_009792432.1  39 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYFDLMD 121
                     ***********************************9966667766579*****************98766664......3599999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-1938123No hitNo description
PROSITE profilePS500906.263899IPR017877Myb-like domain
SMARTSM005952.8E-546128IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASSSSSPPP PLLLPPPEST QPQPQISPSP QKKTQPLPWT HQETFNLIQA YQEKWYSLKK  60
GQLKASQWEE VAITVAARCG FDEPSKSATQ CRHKIEKLRK RYRAERLKPY PNSWQYFDLM  120
DRMERGPLPI SAHPVAMVKC QQNSNSISNL NSTAADHQRY YYDNNTDSDE VDALSYIDTR  180
KNKCKSINHI VRGEMGLMGM NVNVVDHRTV NRMVKDRNFN VFEQKDRNFD VMRGTRNPMN  240
EKRKGYFGNV AIEDDDEDED VEEEVDEENE GSVGGSELAA EIRGFAERFM RMENKKIEMM  300
KETERYRMEM EKRRMEMILE NQRNLIDTIN RVVGSHKKVK VAQEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-123HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792432.10.0PREDICTED: uncharacterized protein LOC104239488
TrEMBLA0A1U7XK510.0A0A1U7XK51_NICSY; uncharacterized protein LOC104239488
STRINGXP_009792432.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124661516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.19e-28Trihelix family protein