PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792484.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 411aa    MW: 43977.7 Da    PI: 5.509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792484.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.1e-052512713555
                     TS-STCHHHHHHHHHHHHHHH CS
             HLH  35 skKlsKaeiLekAveYIksLq 55 
                       K +Ka++L +++eY+k+Lq
  XP_009792484.1 251 RSKTDKASMLDEVIEYLKQLQ 271
                     579*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-7245282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-4248274No hitNo description
SuperFamilySSF474594.84E-7250297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MNQCVPSWEL EDTSTPPKLP LQTQSNSLAP GVPSLDYEVA ELTWENGQLA MHGLGPPRVP  60
NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH VVADTPLVPG  120
LLTMAKDALV PCSANSNYQN RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP  180
THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT  240
GDDHDSVCHS RSKTDKASML DEVIEYLKQL QSQVNMMSRM NMSPAMMLPL AMQQQLQMSM  300
MAAPMGMGMG MGMGMGMTGV AGVLDINTLS RPNITGLPPF LHPTAAAAAA FMQPMTSWDG  360
STDRLNAAAV PDPLAALLAC QSQPMTMDAY SRMAALYQQF LQSAAGSGPK N
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792484.10.0PREDICTED: transcription factor UNE10 isoform X4
TrEMBLA0A1U7XZT20.0A0A1U7XZT2_NICSY; transcription factor UNE10 isoform X4
STRINGXP_009792481.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-51bHLH family protein