PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009792605.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 146aa MW: 16366.1 Da PI: 7.8049

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009792605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.2	2.6e-12	44	119	14	96
T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ lp k + e g+ + ++ + +g++W++ ++ ++++ +++GWk Fv++n+Lk gD +vF+l + s++++++kv XP_009792605.1 44 YMMFLPAKICPELtpGE-----V-PVVLTCRGKKWDMFCSGDNQR---RFKQGWKFFVNDNNLKIGDGLVFELLECSRAKMTFKV 119 56677777776663222.....2.2456679******544444...4899******************7644555554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.35E-15	28	122	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-14	28	123	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.87E-14	29	123	No hit	No description
PROSITE profile	PS50863	11.871	31	125	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0029	31	125	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-10	43	119	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MKGPAKNAKI GKSMAGSKDE DISPLCGKPY FDFILGQSNL EPKYMMFLPA KICPELTPGE 60 VPVVLTCRGK KWDMFCSGDN QRRFKQGWKF FVNDNNLKIG DGLVFELLEC SRAKMTFKVQ 120 ILRGDFPAEL TTEPEDGTPE NPIVLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792605.1	1e-104	PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A1U7Y1E4	1e-103	A0A1U7Y1E4_NICSY; B3 domain-containing protein Os04g0386900-like
STRING	XP_009792605.1	1e-104	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1819	21	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-06	B3 family protein