PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792959.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 526aa    MW: 57260.9 Da    PI: 5.848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09341389355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009792959.1 341 NSHSLAERLRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 389
                     58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.89E-10336393No hitNo description
SuperFamilySSF474591.22E-16336406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16338400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.535338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6341389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10344394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDMVSKDDAE SEKRCEDALS FQSPNMSSDW QLSGSNLTNA SVGMVSNSNP MVDSFCASVW  60
DHPISSSNLG LCDTNIQTIH CTTNADRLRT NVNRMLAMSW TQPNAMSLKG DMFVPPTPGM  120
LPQSLSQFPA DSGFIERAAR FSCFSGGKVG DMMNPFTIPS SPNTYHNALA LHRPQEVFAS  180
NILQSPSAAI SQKQHVGNAV EGSEDVSLPL EHGATDRSPI KHEKNESFAR SLDEAKECVG  240
ISGNESDEAE CSGHQEEVEG KDSSARGLGS KKRKRSGQDT ELDHTKGAQQ PPAEPTKDQT  300
EIQKGEQNRL GGKNSKQGSQ SADPPKEEYI HIRAKRGQAT NSHSLAERLR REKISERMKY  360
LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSVKLA TIDPRLDFNI DGLLAKDILH  420
SRAVPSSSLA FAPDMTMSYH SLQQLPTPLL QSGLPGLGNS TNALLRSIYP HLSATSGGYK  480
ESSSQLPNIW DDELHNVVEM GLSTSAPLHS QNLSGPLPSG QMKEES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792953.10.0PREDICTED: transcription factor bHLH49-like isoform X1
RefseqXP_009792959.10.0PREDICTED: transcription factor bHLH49-like isoform X2
RefseqXP_016462240.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A1S3ZCR30.0A0A1S3ZCR3_TOBAC; transcription factor bHLH49-like
TrEMBLA0A1U7XQ100.0A0A1U7XQ10_NICSY; transcription factor bHLH49-like isoform X1
TrEMBLA0A1U7Y1490.0A0A1U7Y149_NICSY; transcription factor bHLH49-like isoform X2
STRINGXP_009792953.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-110bHLH family protein