PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792994.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 247aa    MW: 28596.7 Da    PI: 10.2953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-16135230195
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt +dv  +  l +p kfa+ +     +g ++++++l++ d+ gr We+k    k +++y++++ Wke v +++Lk+gD+++++l++++ f
  XP_009792994.1 135 FEKELTENDVQGK--LLIPAKFARYFpktisNGHTRRDVKLQFVDPGGRFWEIKW--VKDGSQYFFRGKWKEIVAEHELKSGDIIMIELSHDKHF 225
                     8999988888865..9*******666*****88889*******************..999999***************************99999 PP

                     ..EEE CS
              B3  91 elvvk 95 
                       ++k
  XP_009792994.1 226 PIRFK 230
                     76665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-19133227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-18133227IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.096133233IPR003340B3 DNA binding domain
CDDcd100176.91E-16135231No hitNo description
PfamPF023622.1E-14135230IPR003340B3 DNA binding domain
SMARTSM010191.7E-12135233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRKKSNVDVQ EKAEAKPTSY TGSRTQNLMT PTDEADSFVL ILGHKNVKRR KNINPYYNGD  60
HNMLMYRNSF NVQGREKVMI GDNLMIENKE SVTDAANHSK SSKGSGIKNS FKQMMMCILN  120
RGKPAKEEGR VYSVFEKELT ENDVQGKLLI PAKFARYFPK TISNGHTRRD VKLQFVDPGG  180
RFWEIKWVKD GSQYFFRGKW KEIVAEHELK SGDIIMIELS HDKHFPIRFK KQRNILGSCV  240
TEREGER
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450KNVKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792994.10.0PREDICTED: uncharacterized protein LOC104239940
RefseqXP_016493751.10.0PREDICTED: uncharacterized protein LOC107813059
TrEMBLA0A1S4BXX10.0A0A1S4BXX1_TOBAC; uncharacterized protein LOC107813059
TrEMBLA0A1U7Y1820.0A0A1U7Y182_NICSY; uncharacterized protein LOC104239940
STRINGXP_009792994.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1700945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-06RAV family protein