PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793072.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 345aa    MW: 39671.2 Da    PI: 5.6628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
   XP_009793072.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding53.36.4e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
   XP_009793072.1  67 RGRFTPEEEKLIISLHGAVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.264961IPR017930Myb domain
SuperFamilySSF466895.08E-3011108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002492.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-251568IPR009057Homeodomain-like
CDDcd001674.13E-111761No hitNo description
PROSITE profilePS5129425.29662116IPR017930Myb domain
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.3E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2569117IPR009057Homeodomain-like
CDDcd001671.74E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGAVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKLKKFS  120
KPSTNNTTSI TDQQQRSQLA YNTITTSQPE IFLTQDIGMA KSQVLQDSTL LINSPNQLFF  180
FDNGSLDTMT NVNEATIRGT NNASLFQEIS VLNSEFWQVD QQQQQHQVQI SYTTGMDSNY  240
LPPLIETMVS PMEIPSSKYN NNNMIVEGQD NNQLNEEWSS TCSRITRTNR EMVESNEEWS  300
QIDTQQCCPS YLFWDQEIRS LGGDEIIDPN TSNNLGQILS SFPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX952971e-150X95297.1 L.esculentum mRNA for THM1 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793072.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1U7XM010.0A0A1U7XM01_NICSY; transcription repressor MYB6-like
STRINGXP_009793072.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-82myb domain protein 103