PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793126.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 462aa    MW: 50297.7 Da    PI: 6.7888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11399444655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L++l+P+     +k  + a++L  Av+YIk+L+
  XP_009793126.1 399 SIAERVRRTKISDRMRRLQDLVPNM----DKQTNTADMLDFAVDYIKELE 444
                     689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907393443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15396455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-11397448No hitNo description
Gene3DG3DSA:4.10.280.107.3E-15398454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12399449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8399444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDQSRFQQQP INSGLTRYRS APSSYFSSLL SSTPSSGGGT NITSGGCGYA RDDFSQLQNS  60
RGSNSTDIEQ VFAKFVASIG NQGSNSGSFS STQQIQDNPT SNMNVRSDFI VPKQEVKQQH  120
ERLTRHRSSD YSLVSLMNYQ TQAQQQSQSQ FISSVKQEPE MNYQNLAPQR IDNSKVATSL  180
AAVDNSFTFM TSVNSTGVSP VNIGGRVGAG AGVGVGGGNT NLTRYNSSPA GFFDLINIEN  240
EYGGMRGIGS YGTGANATTE ASLLSSKRFK TQVGISSGKP PASPGLMTPI SEIGDKVVEE  300
NSIGDEQKND ESCITDFPIP SWEDSHILSD DFLKAEDIEI EPFSNVNASN IQNSEGLSRP  360
PIPLSHHLSL PTSTLEKLLQ DSTPLNVRAK RGCATHPRSI AERVRRTKIS DRMRRLQDLV  420
PNMDKQTNTA DMLDFAVDYI KELEKQVKIL AEKRAKCTCT NK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793126.10.0PREDICTED: uncharacterized protein LOC104240039 isoform X1
RefseqXP_016451818.10.0PREDICTED: uncharacterized protein LOC107776436
TrEMBLA0A1S3YIF40.0A0A1S3YIF4_TOBAC; uncharacterized protein LOC107776436
TrEMBLA0A1U7XU050.0A0A1U7XU05_NICSY; uncharacterized protein LOC104240039 isoform X1
STRINGXP_009793126.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-43bHLH family protein