PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009793493.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 114aa MW: 12655.4 Da PI: 4.3531

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009793493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	33.3	1.4e-10	1	37	61	97
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelall 97 +vyeA ar+rdPvyG+vg+i+++q+++ +l++el+++ XP_009793493.1 1 MVYEATARLRDPVYGCVGIISAVQKHVFHLQSELNEA 37 69*******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	4.9E-9	1	36	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	8.815	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MVYEATARLR DPVYGCVGII SAVQKHVFHL QSELNEALAE AMFLRTQLSD ALSLPSLIEG 60 SPFTPENHEF LHFQKPSEQN AYANASDALL LLPEAADHYC LQGTEVLPLP YLDI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	9e-69	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009793493.1	4e-79	PREDICTED: LOB domain-containing protein 4-like
Refseq	XP_016503569.1	3e-78	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_016503570.1	3e-78	PREDICTED: LOB domain-containing protein 25-like isoform X2
TrEMBL	A0A1S4CR38	6e-77	A0A1S4CR38_TOBAC; LOB domain-containing protein 25-like isoform X2
TrEMBL	A0A1S4CRC5	7e-77	A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1
TrEMBL	A0A1U7XRF5	9e-78	A0A1U7XRF5_NICSY; LOB domain-containing protein 4-like
STRING	XP_009793493.1	2e-78	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-12	LOB domain-containing protein 13