PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793632.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 539aa    MW: 60153.9 Da    PI: 5.833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13357402454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N++f+ Lr+llP+      +K +Ka++L  ++eY++sL
  XP_009793632.1 357 HHMISERRRREKLNDSFQLLRSLLPPG-----TKKDKASVLASTTEYLSSL 402
                     68899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.529353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.31E-13353407No hitNo description
SuperFamilySSF474592.22E-17354423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16357420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-11357402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-14359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDSIFFLEEG DRAVFLLKIM ESLGCNYICL WQYYQPSNCF MSLGGIYNGD SDVAQRLFQE  60
YRHSWLIMDN GRIPGLAFKN NVPYMELQFA DFQSHASNPV QLQFYQEAGI KTVICMGCSI  120
GEIEVGMTSS PQVNLEMGLK NLFADYFSRQ AVAPAAAVAP AAAVATRGIP KQLLPIDQNW  180
PSSSSSFSID SPGEYSSLLF NVASTSPYVP EQPRTDTFSD QTIRPIPPVS ATATPYQQAI  240
QTLNQIEGIQ LPTLETEDAA LTRAYLAVMT SPSSSSSSRQ SRENLPTDYN KIATQKATAF  300
TRFRSGLGPN LPIATATTRR QNMFRRSINF FRNLNMMRSR QEQMQPNPRA PTSTQVHHMI  360
SERRRREKLN DSFQLLRSLL PPGTKKDKAS VLASTTEYLS SLKGQVEELS KKNEMLEAQL  420
LQPQNKSSFE QAIISSSTGG NERIAVEITN VGESTSESRT VDLQISVTRE CSILDLVTRL  480
LEFLKRDNNV NLESVAANTR SVVQSEPVTH IILRVRIEGS EWDESSFQEG VKRVVDDLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361366ERRRRE
2362367RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793632.10.0PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBLA0A1U7XNL10.0A0A1U7XNL1_NICSY; putative transcription factor bHLH041 isoform X1
STRINGXP_009793632.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-63bHLH family protein