PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793633.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 534aa    MW: 59655.4 Da    PI: 5.8282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-13352397454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N++f+ Lr+llP+      +K +Ka++L  ++eY++sL
  XP_009793633.1 352 HHMISERRRREKLNDSFQLLRSLLPPG-----TKKDKASVLASTTEYLSSL 397
                     68899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.24E-13348402No hitNo description
PROSITE profilePS5088815.529348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-17349418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16352415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-11352397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-14354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDSIFFLEEG DRAVFLLKIM ESLGCNYICL WQYYQPSNCF MSLGGIYNGD SDVAQRLFQE  60
YRHSWLIMDN GRIPGLAFKN NVPYMELQFA DFQSHASNPV QLQFYQTVIC MGCSIGEIEV  120
GMTSSPQVNL EMGLKNLFAD YFSRQAVAPA AAVAPAAAVA TRGIPKQLLP IDQNWPSSSS  180
SFSIDSPGEY SSLLFNVAST SPYVPEQPRT DTFSDQTIRP IPPVSATATP YQQAIQTLNQ  240
IEGIQLPTLE TEDAALTRAY LAVMTSPSSS SSSRQSRENL PTDYNKIATQ KATAFTRFRS  300
GLGPNLPIAT ATTRRQNMFR RSINFFRNLN MMRSRQEQMQ PNPRAPTSTQ VHHMISERRR  360
REKLNDSFQL LRSLLPPGTK KDKASVLAST TEYLSSLKGQ VEELSKKNEM LEAQLLQPQN  420
KSSFEQAIIS SSTGGNERIA VEITNVGEST SESRTVDLQI SVTRECSILD LVTRLLEFLK  480
RDNNVNLESV AANTRSVVQS EPVTHIILRV RIEGSEWDES SFQEGVKRVV DDLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356361ERRRRE
2357362RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793633.10.0PREDICTED: putative transcription factor bHLH041 isoform X2
TrEMBLA0A1U7XRT90.0A0A1U7XRT9_NICSY; putative transcription factor bHLH041 isoform X2
STRINGXP_009793632.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-64bHLH family protein