PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009793972.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 293aa MW: 33222.6 Da PI: 10.0195

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009793972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.9	1.6e-17	142	232	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v + +l lp +f+e+h ++++ + l de+g ++e + +k+ + l++GW+ F+ +++L++gD +vF+l++ ++f +v XP_009793972.1 142 FIKSMVRSHVYSCFWLGLPTRFCEDHLP--KSTVNVLLVDEEGSEYEALF--IGKRTG--LSGGWRAFALDHKLDDGDALVFELVEATKF--KVY 228 89**********************53..36789***********..555544..*********************9987777..888 PP EE-S CS B3 96 vfrk 99 ++r+ XP_009793972.1 229 IVRT 232 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-21	134	234	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.28E-24	136	236	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.36E-27	140	231	No hit	No description
Pfam	PF02362	1.6E-15	142	231	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-22	142	233	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.422	142	233	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MANENGTTSY EEVRRQRVLD NKKRFEDLGI LSISKNLSDL AKSEKKSDKK YEVTRVRQKA 60 NDVYMLEPRR SGRARNPVPS YRDDVDMELP SFRNRSRLSS SWASYLARPL EEVKMASCQA 120 RAQAIKIAEK LQSNLQSANP SFIKSMVRSH VYSCFWLGLP TRFCEDHLPK STVNVLLVDE 180 EGSEYEALFI GKRTGLSGGW RAFALDHKLD DGDALVFELV EATKFKVYIV RTSYCSSRED 240 KSGAEKGENE AEEASKSVTK KRKKSSKQSE VPTVAKEEIS VAASATRRST RRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	263	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009793972.1	0.0	PREDICTED: putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	3e-68	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A1U7XPI1	0.0	A0A1U7XPI1_NICSY; putative B3 domain-containing protein At5g58280
STRING	XP_009793972.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12510	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	9e-70	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]