PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009794455.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 99aa MW: 11320.6 Da PI: 10.0099

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009794455.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.2	5.3e-07	67	91	1	25
CHHHHHHHHHHHHHHHHHHHHHHHC CS HLH 1 rrrahnerErrRRdriNsafeeLre 25 ++ +hn+ Er RR++ Ns ++ Lr XP_009794455.1 67 KKLNHNASERDRRKNTNSLYSSLRF 91 6789*******************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-5	62	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-4	67	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-4	67	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MFAVSSPLFS NLGLSLADPT SQELNTIENP DSGTNIPRYH SSSRPSIVHS ESKNFNEFNN 60 GDYRIVKKLN HNASERDRRK NTNSLYSSLR FCFQLLIKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009794455.1	6e-67	PREDICTED: transcription factor ORG2-like, partial
TrEMBL	A0A1U7Y6M2	1e-65	A0A1U7Y6M2_NICSY; transcription factor ORG2-like
STRING	XP_009794455.1	2e-66	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	5e-11	bHLH family protein