PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794497.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 557aa    MW: 60111.3 Da    PI: 6.3318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16352398455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_009794497.1 352 VHNLSERRRRDRINEKMRALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 398
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-21346415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.355348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-17351402No hitNo description
Gene3DG3DSA:4.10.280.106.4E-21352406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13352398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MNHSVPEFDM DDDYTIPTSS GLTRPKKSAM AEEDIMELLW HNGQVVMQSQ NQRSLKKSHI  60
SNGGGGGGSG DALIPSEQAV SREIRHVEET TTPQQLFMQE DEMASWLHYP LDDSSSFERD  120
LYADLLYSTP SATVTTAAPP REIRTPPVEI RPPPPHPSPA PPIAVAPRPP IPPPARRPGT  180
ESSHRFQNFG HFSRLPSRTR SELGPSNSSK SPRESTVVDS NETPISGPES RVSQVADNVV  240
PVPGGNGACG AVNVNGTATA STAIREPATT CELSVTSSPG SGNSINASAE PPLSETAALA  300
TPTAAASNDR KRKGIETDDG DGQNEDAEFG SGDTKKHARG STSTKRSRAA EVHNLSERRR  360
RDRINEKMRA LQELIPRCNK TDKASMLDEA IEYLKSLQLQ VQMMSMGCGM VPMMYPGMQQ  420
YMPAMGMGMV GMGMEIGMNR PMVPYPPLLP GAAMQNAAAA AQMGPRFPMA PFHLPPVPVP  480
DPSRMQASSQ QDPMLNPLVA RNPNQPRLPN FNDPYQQHFG LHQAQVQLPQ NQAVEQQGYN  540
KPGSSKEVGN PGNPQSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356361ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794497.10.0PREDICTED: transcription factor PIF1
RefseqXP_016510749.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1S4DC060.0A0A1S4DC06_TOBAC; transcription factor PIF1-like
TrEMBLA0A1U7XR020.0A0A1U7XR02_NICSY; transcription factor PIF1
STRINGXP_009794497.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-53phytochrome interacting factor 3-like 5