PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794538.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 100aa    MW: 12117.7 Da    PI: 10.0687
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-184093356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k++++ ++q++ Le+ Fe ++++  e++ +LAk++gL+ rqV +WFqNrRa++k
  XP_009794538.1 40 KKRRLLPKQVQFLEKSFEVENKLEPERKIQLAKETGLQPRQVAIWFQNRRARYK 93
                    45578899*********************************************9 PP
2HD-ZIP_I/II94.31.3e-3039100162
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkd 62 
                     ekkrrl  +qv++LE+sFe e+kLeperK +la+e glqprqva+WFqnrRAR+k+kqlEkd
  XP_009794538.1  39 EKKRRLLPKQVQFLEKSFEVENKLEPERKIQLAKETGLQPRQVAIWFQNRRARYKSKQLEKD 100
                     69**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-192697IPR009057Homeodomain-like
PROSITE profilePS5007116.6653595IPR001356Homeobox domain
SMARTSM003899.5E-183899IPR001356Homeobox domain
CDDcd000862.15E-134096No hitNo description
PfamPF000465.2E-164093IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.9E-194794IPR009057Homeodomain-like
PRINTSPR000311.1E-56675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000311.1E-57591IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MVNFDDTRGT KTKERSFFPS LDKEENSNED YEVSFHQPEK KRRLLPKQVQ FLEKSFEVEN  60
KLEPERKIQL AKETGLQPRQ VAIWFQNRRA RYKSKQLEKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795RRARYKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794538.12e-67PREDICTED: homeobox-leucine zipper protein HAT5-like, partial
SwissprotQ022832e-28HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1U7XUD05e-66A0A1U7XUD0_NICSY; homeobox-leucine zipper protein HAT5-like
STRINGXP_009794538.19e-67(Nicotiana sylvestris)
STRINGXP_009801495.17e-65(Nicotiana sylvestris)
STRINGXP_009801498.13e-66(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-31homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]