PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009794708.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 219aa MW: 24165.7 Da PI: 8.1033

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009794708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.9	6.5e-42	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la XP_009794708.1 41 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEANARLRDPVYGCAGAICHLQKQVNELQVQLA 135 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_009794708.1 136 KAQAE 140 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.85	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-42	41	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MESSDTTATT ITSPISSRSD SPSSASPPNS PPPRQVVIVS PCAACKILRR RCAEKCVLAP 60 YFPPNDPIKF TTAHRVFGAS NIIKFLQELP EFQRADAVSS MVYEANARLR DPVYGCAGAI 120 CHLQKQVNEL QVQLAKAQAE IVNMQCEQAN LMALICMEMT QSPQASPHHY SLGNLTNITY 180 VSTHEMLTPV SSVNQQCLFT HNLCRAQLQS HFLSWKKNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	40	148	10	118	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	40	148	10	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	4e-69	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	4e-69	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009794708.1	1e-163	PREDICTED: LOB domain-containing protein 1-like isoform X1
Swissprot	Q9LQR0	5e-68	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1U7XUU1	1e-162	A0A1U7XUU1_NICSY; LOB domain-containing protein 1-like isoform X1
STRING	XP_009794709.1	1e-114	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-70	LOB domain-containing protein 1