PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794797.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 116aa    MW: 13563.4 Da    PI: 9.6867
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.8e-1614891797
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     +pk+fa+e+g+++++  t+ ++d + rsWe+ l    +++++++++GW eF+ an Lkeg  v+F+    + +++ +k++
  XP_009794797.1 14 HVPKQFARENGLSNRKC-TILIRD-EQRSWEFSL--YSCGRSTFIGGGWHEFCAANLLKEGYRVMFEILA-KAEKPILKFY 89
                    48********9997664.777777.78*******..999999*************************655.6666677665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.11194IPR003340B3 DNA binding domain
SMARTSM010192.4E-8392IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-161388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-141388IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-141489IPR003340B3 DNA binding domain
CDDcd100175.62E-131590No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MNYLRETGYK LFQHVPKQFA RENGLSNRKC TILIRDEQRS WEFSLYSCGR STFIGGGWHE  60
FCAANLLKEG YRVMFEILAK AEKPILKFYD LRANASLRTE RKNPDSDANR YSTQGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794797.12e-83PREDICTED: B3 domain-containing protein REM14-like, partial
TrEMBLA0A1U7XRW55e-82A0A1U7XRW5_NICSY; B3 domain-containing protein REM14-like
STRINGXP_009794797.18e-83(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.13e-11B3 family protein