PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794813.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 253aa    MW: 29925 Da    PI: 9.8176
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794813.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.8e-191360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W+ +ar +g++R +k+c++rw +yl
   XP_009794813.1 13 KGPWTAEEDRLLIEYVNLHGEGRWNFVARLVGLKRNGKSCRLRWVNYL 60
                     79********************************************97 PP
2Myb_DNA-binding47.93e-1566110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+++++++++ +G++ W+tIar ++ gRt++++k++w+++
   XP_009794813.1  66 RGQITPYEEKIILELHAVWGNR-WSTIARGLP-GRTDNEIKNYWRTH 110
                      6788999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.941864IPR017930Myb domain
SuperFamilySSF466894.67E-3011107IPR009057Homeodomain-like
SMARTSM007171.8E-171262IPR001005SANT/Myb domain
PfamPF002498.4E-181360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-241467IPR009057Homeodomain-like
CDDcd001671.05E-111560No hitNo description
SMARTSM007174.5E-1365113IPR001005SANT/Myb domain
PROSITE profilePS5129418.97465115IPR017930Myb domain
PfamPF002494.6E-1366110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-2468116IPR009057Homeodomain-like
CDDcd001672.50E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKKWGVIEEE WRKGPWTAEE DRLLIEYVNL HGEGRWNFVA RLVGLKRNGK SCRLRWVNYL  60
RPDLKRGQIT PYEEKIILEL HAVWGNRWST IARGLPGRTD NEIKNYWRTH FKKKVKKSST  120
ENSEKAKARL LKRQQFQPQQ QQQQKLNDQI DMKRVMSLFE ENENNKVPKL SQGKQEMALL  180
YQNRADQQEQ GGFFYSMING YATVSIHEVS LNHEDIMWDY GLWNLDEFNA NLNIGSYNKS  240
SPCLQTQLAT PFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28131157108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755179e-43HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794813.10.0PREDICTED: transcription factor MYB59-like
TrEMBLA0A1U7XV330.0A0A1U7XV33_NICSY; transcription factor MYB59-like
STRINGXP_009794813.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-81myb domain protein 305