PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009794822.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 154aa MW: 16785.6 Da PI: 4.9172

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009794822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.3e-05	115	142	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 + h +Er+RR+r + f+ L + +P + XP_009794822.1 115 QDHLLAERKRRERFTQLFAVLAKSIPGL 142 668899*******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.05E-5	103	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-4	116	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MENASFNNLE NTAGDEEPFE FKNLLSEMFT SFPNQNPSST SSLMEIPKIA FSSSPNSSTS 60 TNSSSSSSLN IISFGNPDSN FLGDEIDYDM ISEKVVIGLS SSPTKRICRS PLQSQDHLLA 120 ERKRRERFTQ LFAVLAKSIP GLKKVTGSSC GSSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	125	ERKRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009794821.1	1e-107	PREDICTED: transcription factor NAI1-like
Refseq	XP_009794822.1	1e-107	PREDICTED: transcription factor NAI1-like
TrEMBL	A0A1U7XRY9	1e-105	A0A1U7XRY9_NICSY; transcription factor NAI1-like
STRING	XP_009794821.1	1e-106	(Nicotiana sylvestris)
STRING	XP_009794822.1	1e-106	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12598	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.1	3e-10	bHLH family protein