PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794885.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 813aa    MW: 88856 Da    PI: 6.6045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.9e-19242341198
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k l+ sd+++ grlvlpkk+ae++    +  ++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  XP_009794885.1 242 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PE 332
                     89**************************543..556667***************9989999999***9.********************887.56 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     ++lv++ ++
  XP_009794885.1 333 GKLVMGCRK 341
                     656665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-30238342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-19239338IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-23240341No hitNo description
SMARTSM010197.8E-23242342IPR003340B3 DNA binding domain
PfamPF023621.9E-16242341IPR003340B3 DNA binding domain
PROSITE profilePS5086311.082242343IPR003340B3 DNA binding domain
PROSITE profilePS5105013.676498548IPR011124Zinc finger, CW-type
PfamPF074965.1E-11503545IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MLAMVKVNRK TPNPAWPPPS LFHPLQPERI KDVNNWNPIA GSGPVPWRQA PSLFNGSAIQ  60
NELQPRTPFL DATGSIDRLC LGERPSALSS DNSRKDSCEK LMNGKLKIGV PGTLENGYAG  120
LNHEEPPKSC ISGPPQLSYA KNDLSAPSFS LTIGSSCKNE PTDHSKVSIS LQQQTTLSTP  180
LGKQLGGHAT VDYAGETQVR NSKTRVDGRG KHHLLPRYWP RITDEELQQI SGDSNSVITP  240
LFEKMLSASD AGRIGRLVLP KKCAEAYFPP ISNPEGLPLK VQDLKGKEWM FQFRFWPNNN  300
SRMYVLEGVT PCIQSMQLQA GDIVTFSRIE PEGKLVMGCR KASTTLTADQ GSEACSNSNG  360
VVTNGNVNTQ STKFSEEVLA NSTKKGFSST THVAPADSTI GWAETKLSDD MAMEFLGNNR  420
SIRCKRKSST LGSKSKRLRI DNEDLVELKV TVVQAQGLMR PPSSDAPTVI VIEGCEFEEY  480
EQDAPIIGRP AIPSVDHLGE KIQWVQCEDC FKWRKVPDSA LLPSRWTCSE NSWDSERSVC  540
SADQELTADH LRDLLPRINK AAKKMKASKQ ETDVEALDGL DALANLAILD EGETLPASSQ  600
ATTKHPRHRP GCTCIVCIQP PSGKGPKHKQ SCDCIVCKSV KRRFKTLMLK REKKLSEKEA  660
EAACQKLQPQ LAGQLLDAGD IQESNDDAGH FSPQRGELNN EGYADDPNYP NEKKSSALPF  720
KGEIDLNAKP ERDDELSPGS DSGSIMRILQ VAAEQYVRHC ENGSFTGNHE NGDGTGETNP  780
NNCVIVGGTN QTDVDHNRPL SIGTAASLAP NDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-642203431124B3 domain-containing transcription repressor VAL1
5yzz_C2e-642203431124B3 domain-containing transcription repressor VAL1
5z00_C2e-642203431124B3 domain-containing transcription repressor VAL1
5z00_G2e-642203431124B3 domain-containing transcription repressor VAL1
5z00_K2e-642203431124B3 domain-containing transcription repressor VAL1
5z00_M2e-642203431124B3 domain-containing transcription repressor VAL1
6j9a_A2e-642203432125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-151HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794885.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X4
TrEMBLA0A1U7Y7T80.0A0A1U7Y7T8_NICSY; B3 domain-containing protein Os07g0563300 isoform X4
STRINGXP_009794882.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-140HSI2-like 1