PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794990.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 254aa    MW: 29864.1 Da    PI: 8.9665
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.2e-36221142103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++ ++++sw en ++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++          eF++++Fkkg+k+ll+k
  XP_009794990.1  22 FLTKTYQLVDDQSSNHIVSWGENDTTFVVWKPLEFAKDLLPNYFKHNNFSSFVRQLNTYGFKKIVPDR---------CEFSNENFKKGQKHLLCK 107
                     9*****************************************************************99.........67**************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+ks+
  XP_009794990.1 108 IQRRKST 114
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3617106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5518111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.88E-3320111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.0E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSSSEMISTV QDCQRAIMAA PFLTKTYQLV DDQSSNHIVS WGENDTTFVV WKPLEFAKDL  60
LPNYFKHNNF SSFVRQLNTY GFKKIVPDRC EFSNENFKKG QKHLLCKIQR RKSTTQQLHH  120
LKPYHENITK NILYQPKTQN NPSTDDFLLL TLTQDNQRLR KRNNLLLSEL AHMKNLYNNI  180
IYFIQNYVKP VDQKSCLFLL NEGLNLRVND HRHDHQVNIE DEEPKSSSVK LFGVSLCGKK  240
RLHHQLIDQE VLEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-21221165110Heat shock factor protein 2
5d8l_B2e-21221165110Heat shock factor protein 2
5d8l_D2e-21221165110Heat shock factor protein 2
5d8l_F2e-21221165110Heat shock factor protein 2
5d8l_H2e-21221165110Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754507e-59HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755237e-59HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794990.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6356e-73HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1U7Y8490.0A0A1U7Y849_NICSY; heat stress transcription factor B-4-like
STRINGXP_009794990.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-56heat shock transcription factor B4