PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009795062.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 270aa    MW: 31777.9 Da    PI: 9.516
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009795062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
   XP_009795062.1 23 KGPWTAEEDRLLIEYVKLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 70
                     79******************************9*************97 PP
2Myb_DNA-binding51.81.9e-1676120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   XP_009795062.1  76 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.831874IPR017930Myb domain
SuperFamilySSF466899.35E-3120117IPR009057Homeodomain-like
SMARTSM007174.1E-172272IPR001005SANT/Myb domain
PfamPF002491.7E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-242477IPR009057Homeodomain-like
CDDcd001674.66E-122570No hitNo description
PROSITE profilePS5129419.61675125IPR017930Myb domain
SMARTSM007176.4E-1575123IPR001005SANT/Myb domain
PfamPF002497.8E-1476120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2478124IPR009057Homeodomain-like
CDDcd001674.49E-1080121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLSEIMSSEQ MGNWGIIDEG WRKGPWTAEE DRLLIEYVKL HGEGRWNSVA RLTGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PHEERIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKTKTLCA NSDKSRARLW KRQQFQQQQQ HQLQQQQQQQ INNQIDIKRV ISLFDSNENK  180
VPTMPQAKQE MTILYPNTVD QQNQVGFFYS MLNGCSSVSV PEPSSDEDIM WDGLWNLDDF  240
YGQFINTTTY NKTITTPNCL QTMATTPAFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-282312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795062.10.0PREDICTED: transcription factor MYB21-like
TrEMBLA0A1U7XSM80.0A0A1U7XSM8_NICSY; transcription factor MYB21-like
STRINGXP_009795062.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.16e-80myb domain protein 305