PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009795118.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 193aa MW: 21998.2 Da PI: 5.0363

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009795118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.9	3.3e-07	112	156	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ +eL +l+P kK++ a + + A +YI+ Lq XP_009795118.1 112 SIAARQRRKKITEKTHELGKLIPGG-----KKMNTAVMFQAAYKYINFLQ 156 6788*****************87.....8***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.99E-8	104	159	No hit	No description
PROSITE profile	PS50888	12.265	106	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-11	107	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-11	109	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-9	112	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-5	112	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSSIPFFCNL PVGAVNHDEV NSELMTVDDQ LLLGFKDESF PILDRSTCFL EPLYNSNDLF 60 LPQVKIFQDN NYFNGFVPML PEFESLPVYK SENGLGTKES SKCNEKNLSA QSIAARQRRK 120 KITEKTHELG KLIPGGKKMN TAVMFQAAYK YINFLQAQVG ILQFMASYQE ERELFQTPQI 180 CWISINSGEV VFQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795118.1	1e-143	PREDICTED: transcription factor bHLH52
TrEMBL	A0A1U7XW08	1e-141	A0A1U7XW08_NICSY; transcription factor bHLH52
STRING	XP_009795118.1	1e-142	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3856	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	5e-21	bHLH family protein