PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009795437.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 259aa MW: 28742.2 Da PI: 4.3258

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009795437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	90.1	3.6e-28	131	248	1	126
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv+ L++c eav+ ++l+la+al+ ++e+a ++ +p++++a+yf+eAL +++++ +l ++++ + ++l+ ++ev P+l+f++ XP_009795437.1 131 LVKILMACGEAVQRNNLNLADALVRLIREHAVSQFRPIKKVATYFAEALDQKIQG--MNLEDIMEFCCYT-----DNLMQ-MRLHEVRPYLEFAY 217 6789*************************************************..4444444444443.....33333.3489****** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWp 126 N+aIl+a+++++rvHiiDf+++qG QW+ XP_009795437.1 218 SSVNRAILDAFANSSRVHIIDFSLNQGPQWL 248 ****************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	18.321	105	259	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-25	131	248	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSMDTIMENS DSFVSTTDAI IHGASNISGW TQSLISDPNI PNSSTSVDDH LQQISTAGNG 60 DDMIVSCATS RIFNSIDVSA FSRNINAVCD NYSDKLAEEG SESSNEMRSR DGLELCLGLS 120 IGSGAVNEEL LVKILMACGE AVQRNNLNLA DALVRLIREH AVSQFRPIKK VATYFAEALD 180 QKIQGMNLED IMEFCCYTDN LMQMRLHEVR PYLEFAYSSV NRAILDAFAN SSRVHIIDFS 240 LNQGPQWLFG SLEYNWLTR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795437.1	0.0	PREDICTED: DELLA protein GAI-like
TrEMBL	A0A1U7XTS4	0.0	A0A1U7XTS4_NICSY; DELLA protein GAI-like
STRING	XP_009795437.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA23815	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	8e-32	GRAS family protein