PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009795495.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 304aa MW: 33596.7 Da PI: 7.3935

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009795495.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.5	2e-07	170	196	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + XP_009795495.1 170 SHSLAERARREKINARMKLLQELVPGC 196 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.76E-8	164	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.11E-5	164	198	No hit	No description
PROSITE profile	PS50888	9.464	166	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-8	169	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-5	170	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGEMGTASSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYPPPPPP PPPIFPSDAA 60 LIDRAFKFSV FAAAAGISPE SNSTLSNSGS KSLLVKQEPL DSELNQNSSP ITVSNPTVNQ 120 KTTKRKEREK KVKETSSKKG KKSTNNTSED DAEKLPYVHV RARRGQATDS HSLAERARRE 180 KINARMKLLQ ELVPGCNKFL SMRLAAVNPS VDFNLDNLFA PERSGSHVES NLPDMIVPPI 240 WADGQTSGNR NQYQHLWHLE GFHQPVWGRV EDNSSFITPE NSLLTYDSSA NSASLHPNQL 300 KMEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795495.1	0.0	PREDICTED: transcription factor bHLH60-like isoform X2
TrEMBL	A0A1U7Y9J1	0.0	A0A1U7Y9J1_NICSY; transcription factor bHLH60-like isoform X2
STRING	XP_009795428.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	5e-46	bHLH family protein