PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796745.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 250aa    MW: 29294.2 Da    PI: 8.4328
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.49.2e-3330128289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+L +d++sk++eWLl++a p+i el+++++ + ++  +++++ss + n+  g       
  XP_009796745.1  30 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLSYDQPSKAVEWLLKAATPSISELPSLNAFPDTQQiSEDKRSSVGTNEMDGddeedvd 124
                     689*************************************************************6666644432222222222222223333333 PP

             TCP  89 ...k 89 
                        +
  XP_009796745.1 125 vepE 128
                     3331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3331116IPR005333Transcription factor, TCP
PROSITE profilePS5136930.8883290IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEMVDLSHKM KMKRLCGWPS NRIVRVSRAS GGKDRHSKVW TSKGLRDRRV RLSVNTAIQF  60
YDLQDRLSYD QPSKAVEWLL KAATPSISEL PSLNAFPDTQ QISEDKRSSV GTNEMDGDDE  120
EDVDVEPELT REHASPSPVR PRVYESHVSF HERNIPYLNN LPSMPDVDAL TRDDDEIRSA  180
MWDESRPAMR VKGMYFPDKA LLIRAVKIYS VRECREMTVR ESTMEEYYKD KLYFLHNLCT  240
RYRKRERQSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-203791155Putative transcription factor PCF6
5zkt_B2e-203791155Putative transcription factor PCF6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796745.10.0PREDICTED: transcription factor TCP3-like
TrEMBLA0A1U7YD640.0A0A1U7YD64_NICSY; transcription factor TCP3-like
STRINGXP_009796745.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-39TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2