PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796881.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 424aa    MW: 47985.2 Da    PI: 7.6797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12255301354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e+Er+RR+++N++f  Lr+++P+       K++ a+ L  Av YI++L
  XP_009796881.1 255 KKHVEAERQRREKLNNRFYALRSVVPNV-----SKMDRASLLADAVTYINEL 301
                     5799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-3910162IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.15E-17252314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.628252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9255301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-13255306No hitNo description
Gene3DG3DSA:4.10.280.103.1E-16256310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-15258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEDITSTNTL QKHLQYIIHS RQEWWVYAIF WQASKDANGR LIFSWGDGHF RGTKNLANSA  60
TVRIPNVDNN VSDTELFYMV SVPKYFVADN ELIVRAYNPT SYIWLNNYDE LQLYNYDRAK  120
EAHLHGIRTL VCIPTPNGVV ELGSSEIIQE NWEIVQLSRS LFGLSNNNIV TPSPINHQDL  180
SSFNFVPLGE NHKVENDSPQ ATDTKLKQET VDGNISLGNS DSFENESSTI NNINRPIKRG  240
RKSSSSNATG TEMAKKHVEA ERQRREKLNN RFYALRSVVP NVSKMDRASL LADAVTYINE  300
LKAKVEELES YKILSQKPKR QCATNSVQTV PSTVLNRANN SFGMEVEVKI IGLEAMVRVR  360
SPDVNYPCAR LMNVLRELEL QVNHASVSSV KNLMLQDVVI KVTNEVANEE VLKSVILKRL  420
SVAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2381627192Transcription factor MYC3
4rqw_B1e-2381627192Transcription factor MYC3
4rs9_A1e-2381627192Transcription factor MYC3
4yz6_A1e-2381627192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796881.10.0PREDICTED: transcription factor MYC2-like
RefseqXP_016442441.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1S3XR660.0A0A1S3XR66_TOBAC; transcription factor MYC2-like
TrEMBLA0A1U7Y4J70.0A0A1U7Y4J7_NICSY; transcription factor MYC2-like
STRINGXP_009796881.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-65bHLH family protein