PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009796922.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 258aa MW: 30338.7 Da PI: 10.4465

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009796922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46	6.7e-15	8	51	6	49
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ +v + R ++++KKAeELS+LC++e+ +++fs++ k ey XP_009796922.1 8 ERGSSVVLQERMETLFKKAEELSILCGVEIGIVVFSPHKKNAEY 51 566789999***************************98776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.783	1	55	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.4E-5	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-15	7	90	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-13	7	48	IPR002100	Transcription factor, MADS-box
CDD	cd00120	7.18E-13	7	55	No hit	No description
PRINTS	PR00404	1.7E-5	17	32	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-5	32	53	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MARKNINERG SSVVLQERME TLFKKAEELS ILCGVEIGIV VFSPHKKNAE YEWPSRDKFK 60 QLLMRFLDKP LVERLKKLTT HEEFLRKEIE KNVRKIDPQK TEEKEMEQLF KQLYHGKKTV 120 FELDRRQLIG VRNLAIKAKE KAVERRIRLQ LQDQRLWLPI DHVPFLVASL NVPDQRLQLP 180 IDPIPLRVAP LNVHDQRQIL QLPIDHVPLR VATLNVQDQR LHLPIDDPLA LRLAPPNVQY 240 QRLQLPIVDP LKLRLAPP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796922.1	0.0	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A1U7XY71	0.0	A0A1U7XY71_NICSY; agamous-like MADS-box protein AGL80
STRING	XP_009796922.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	4e-14	M-type_MADS family protein