PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009797177.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 80aa MW: 9288.76 Da PI: 5.4925

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009797177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.6	2.9e-08	5	40	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ +++a +++G++ W+++a+ + Rt++++ XP_009797177.1 5 HWSEEDLTHFYQAYRKYGKD-WEKVAAAVK-PRTAEMV 40 5***************99.******9.8999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.214	1	54	IPR017884	SANT domain
SMART	SM00717	7.1E-4	2	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.51E-11	4	51	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-7	5	41	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-6	5	47	IPR009057	Homeodomain-like
CDD	cd00167	5.20E-6	6	40	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MIGPHWSEED LTHFYQAYRK YGKDWEKVAA AVKPRTAEMV EALYIMHMAY LSLPEGTASA 60 VGLIALMTDH YCYLVWLEIY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009797177.1	2e-53	PREDICTED: protein ALWAYS EARLY 3-like
Refseq	XP_016490540.1	2e-53	PREDICTED: protein ALWAYS EARLY 3-like
Swissprot	Q6A332	1e-30	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1S4BNW9	4e-52	A0A1S4BNW9_TOBAC; protein ALWAYS EARLY 3-like
TrEMBL	A0A1U7XYY5	4e-52	A0A1U7XYY5_NICSY; protein ALWAYS EARLY 3-like
STRING	XP_009797177.1	7e-53	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15899	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	5e-33	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]