PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009797242.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 857aa    MW: 97638.4 Da    PI: 8.725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009797242.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.6e-1318106198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ + ++++k+    +p +f+ ++g + +    ++le +sg  W+vkl  +++ g+ +l++GW +F +   +  g f++F+++g+s f   v+
  XP_009797242.1  18 FFKIILFPHASKL---HIPDEFVMKYGANMRD--LVSLEVPSGALWKVKL--QNSNGMAWLKEGWDQFKEYYSIGCGYFLLFQYNGNSHF--SVS 103
                     5666666666665...5*********988655..8***************..**********************************9999..999 PP

                     EE- CS
              B3  96 vfr 98 
                     +f+
  XP_009797242.1 104 IFD 106
                     987 PP
2B356.74.5e-18740835199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+  + p +v+++ +l +p +f++++ ++  e+  ++l+ ++gr+W+ +++++ +  r+  + GW+eF+ +ngLk+ D++vF+l++  e  l+++
  XP_009797242.1 740 FIVSMQPTHVSRNFLLNIPGNFFRRYFKE--EEAFVILRASDGRTWRARCSFQSNCARI-HSPGWREFALDNGLKVHDTCVFELMEGIELVLNIT 831
                     67789999******************755..4457****************99998885.577*********************98877778888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +fr+
  XP_009797242.1 832 IFRA 835
                     8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1915108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.61715108IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-2015115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-1516106No hitNo description
PfamPF023621.9E-1018106IPR003340B3 DNA binding domain
SMARTSM010191.4E-1218108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-23734838IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-22734838IPR015300DNA-binding pseudobarrel domain
CDDcd100174.82E-21738834No hitNo description
PROSITE profilePS5086313.592740836IPR003340B3 DNA binding domain
PfamPF023629.8E-17740835IPR003340B3 DNA binding domain
SMARTSM010191.1E-14740836IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MVKRRRQAVN VAEITPQFFK IILFPHASKL HIPDEFVMKY GANMRDLVSL EVPSGALWKV  60
KLQNSNGMAW LKEGWDQFKE YYSIGCGYFL LFQYNGNSHF SVSIFDLSAS EIEYPSGPSE  120
DMTPENFVKI VGDASHIKKE VGPETNNNAC DDIVDDLLRK KTAKVTKVAD HSYPRRQRSG  180
VPEWQDPIRV NLEKPDVEED LYCATDKEKR KEIKKEKLEK QNMEKNLYHA ADKGKEHCKE  240
VLDPPASKMT NTSRCNKRKY STSLEAPHCR HPLRSKSKPV EVVKLDQSKT EGTMHCVKPK  300
NTVVADSSHS GRQKTAAPIS CPETIEPKTK PEKVNLEEDF HCAAPKARRG ETNMEKLEKQ  360
VVQQNVYAEA YKFKEHCNEV PVVDSSASKM TTTNQQSEKK TTINLDASCC RYPLRSKQLK  420
EVKLEKRDTE EDLFCAAQKA KKTETNRVKL DKGDAEEHCI EVPVVDPSAP KMTTTNQHTE  480
KKTAMSSDVL HCRYPLRSKQ LKDVMIEKRD LKEHCNEVSV VDLSASKMIT TNRHTEKKTA  540
TSLDASWCRY PLRSKQLKDV KIEKRDVEEH CNKLPVMDPS ASEMTTTNQH SGKKTATSLD  600
VSRCRYPLRS KQLKEVKLEQ WGGEKNMHNL KPKNKVVADS PYCERQNSGL PASSPSFHPE  660
KKEPIRVKLE KPDVEEDLFC AAQKAKMKVI NNVKLEIGDV EGNLNSAAYK VKASEMTNTW  720
QEKGYTLIDA QCSKLGNPYF IVSMQPTHVS RNFLLNIPGN FFRRYFKEEE AFVILRASDG  780
RTWRARCSFQ SNCARIHSPG WREFALDNGL KVHDTCVFEL MEGIELVLNI TIFRADSCFL  840
KDNLPLCGQG RDSVTVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1471383622143B3 domain-containing transcription factor VRN1
4i1k_B2e-1471383622143B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797242.10.0PREDICTED: uncharacterized protein LOC104243691 isoform X2
RefseqXP_016495503.10.0PREDICTED: uncharacterized protein LOC107814576 isoform X2
TrEMBLA0A1S4C3750.0A0A1S4C375_TOBAC; uncharacterized protein LOC107814576 isoform X2
TrEMBLA0A1U7XZ370.0A0A1U7XZ37_NICSY; uncharacterized protein LOC104243691 isoform X2
STRINGXP_009797235.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-22B3 family protein