PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009797324.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 264aa    MW: 29192.2 Da    PI: 4.5556
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009797324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.46.3e-131693098
           NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++adedv +i+  +P l+ska elf+ +l  r++  + ++  +t++   +++++++ ++fdfl d+v r
  XP_009797324.1  1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLKQCIQSFNVFDFLKDVVSR 69
                    899***************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.7E-11154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.8E-18168IPR009072Histone-fold
SuperFamilySSF471135.82E-19170IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLKK GAKTMNSFHL KQCIQSFNVF  60
DFLKDVVSRV PDLGGSDGGA ESATKRRKVV EEDDHDSDDD IKRSSRMHET AHTSGSGRGR  120
GRGRGRGRGR GARAVERGDS NVHCDKIEDP ADVSNQNNEK QKQNDERMDY VAEPAESKNI  180
SAGKCPEVPA RNFDLNIDLN ESVESTAIPA EAPSTSKMAP PEVKHEEIPG WSLSEMEKMA  240
IDPMQLANLN RGLDEEEEDY DEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-141552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119129RGRGRGRGRGR
2121130RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754505e-35HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797323.10.0PREDICTED: dr1-associated corepressor-like isoform X1
RefseqXP_009797324.10.0PREDICTED: dr1-associated corepressor-like isoform X2
TrEMBLA0A1U7Y2F60.0A0A1U7Y2F6_NICSY; dr1-associated corepressor-like isoform X1
TrEMBLA0A1U7YDK00.0A0A1U7YDK0_NICSY; dr1-associated corepressor-like isoform X2
STRINGXP_009797323.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.16e-50NF-YC family protein