PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009797952.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 262aa MW: 29240.9 Da PI: 6.7229

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009797952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	4.1e-09	152	199	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + k + a +L ++Y++sLq XP_009797952.1 152 SHSLAERLRREKINEKLRSLQELVPGC----YKTMGMAVMLDVIINYVRSLQ 199 8*************************8....355888888999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-16	146	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.32E-11	146	202	No hit	No description
PROSITE profile	PS50888	15.504	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-15	148	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	152	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-8	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MNSNMELLNQ EVENLSSNIQ LGDLALSNEG FSIHHQRIHH IDHDQIPMIM AFNNDMNLSS 60 NISNSQNVYD PVGAQFFTLG GPTYGINSIP ESDFLMNNIS TPAPPVSIGN GKVNGNYQNC 120 GGKKRKRKND RAADKPREVV HVRAKRGQAT DSHSLAERLR REKINEKLRS LQELVPGCYK 180 TMGMAVMLDV IINYVRSLQN QIDFLSLKLS AASLFYDFNS SEMEAMDSMQ QGKNVYEAQG 240 MGKIDGEGYG GFPHFQPSWP SL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	127	KKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009797952.1	0.0	PREDICTED: transcription factor bHLH75-like isoform X1
Swissprot	A4D998	9e-51	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A1U7Y1A6	0.0	A0A1U7Y1A6_NICSY; transcription factor bHLH75-like isoform X1
STRING	XP_009797952.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9069	17	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	6e-45	bHLH family protein

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]