PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009797953.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 261aa    MW: 29112.8 Da    PI: 6.7229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009797953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09151198455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L+el+P +     k +  a +L   ++Y++sLq
  XP_009797953.1 151 SHSLAERLRREKINEKLRSLQELVPGC----YKTMGMAVMLDVIINYVRSLQ 198
                     8*************************8....355888888999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.19E-11145201No hitNo description
SuperFamilySSF474595.89E-16145213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-15147205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.504147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-8153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNSNMELLNQ EVENLSSNIQ LGDLALSNEG FSIHHQRIHH IDHDQIPMIM AFNNDMNLSS  60
NISNSQNVYD PVGAQFFTLG GPTYGINSIP ESDFLMNNIS TPAPPVSIGN GKVNGNYNCG  120
GKKRKRKNDR AADKPREVVH VRAKRGQATD SHSLAERLRR EKINEKLRSL QELVPGCYKT  180
MGMAVMLDVI INYVRSLQNQ IDFLSLKLSA ASLFYDFNSS EMEAMDSMQQ GKNVYEAQGM  240
GKIDGEGYGG FPHFQPSWPS L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797953.10.0PREDICTED: transcription factor bHLH75-like isoform X2
TrEMBLA0A1U7Y4910.0A0A1U7Y491_NICSY; transcription factor bHLH75-like isoform X2
STRINGXP_009797952.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.15e-47bHLH family protein