PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798049.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 837aa    MW: 94241.4 Da    PI: 9.9711
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-1028117198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+    + ++ + l++p +fa+++ ++  ++  + le ++g++Wev++    ++g++ l+ GW++F +   +  g f++F ++ rs f  +v+
  XP_009798049.1  28 FFKII--LSQHECSSLRIPEDFARRYCKNMLNP--VYLEVPTGEVWEVEV--VLSQGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVT 114
                     66666..444455569**********5454444..***************..899999**************************999999..999 PP

                     EE- CS
              B3  96 vfr 98 
                     +f+
  XP_009798049.1 115 IFD 117
                     987 PP
2B348.81.3e-15283375498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + ps+v++   l++  kfa+++ +++ ++  l++  +   sW+vk+  + ++   +  +GWk Fv +n+Lk gD +vF++++ ++    v++fr
  XP_009798049.1 283 FMQPSYVFSPFSLSVALKFARKYFLENYGNLVLRVPGKGRGSWSVKC--TTRGTNATVYSGWKAFVLDNKLKCGDACVFEVIKGTRLFIDVTIFR 375
                     6889*******************88888887788888888*******..66666777889********************987655556677766 PP
3B341.72e-13539629598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     + ps+v+k   l ++  fa ++  +k ++  l+l+ +   sW vk+   k+++++ ++  Wk Fv +n+L+ gD++vF+l++  ++  l v++fr
  XP_009798049.1 539 MQPSYVSKPYSLQISLLFAVKYFREK-CG-NLVLRVPGRGSWPVKYALGKSKSKICFS--WKAFVLDNKLNFGDVCVFELIKGgTKPILDVTIFR 629
                     67999999999***********7554.43.8***************999999999999..********************976566667777776 PP
4B346.18.9e-15741825793
                     .-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..E CS
              B3   7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelv 93 
                     ps+v++     +l++  + a+++ +   ++ +++l+ +s +sW vk+i   +     l++GWkeFv +n+Lk+gD++vF+++ +r +  l+
  XP_009798049.1 741 PSYVSSAsgpVQLSITLERARKFFST--RHSDVVLRVSSKKSWAVKCIL--GTVNAKLSSGWKEFVLDNNLKVGDVCVFERViSRPK--LL 825
                     44444445556799999999999755..4558***************65..333346***********************5523333..34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-1722119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1624119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-1026117No hitNo description
PROSITE profilePS5086310.72926119IPR003340B3 DNA binding domain
PfamPF023621.9E-728117IPR003340B3 DNA binding domain
SMARTSM010194.9E-729119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-20272376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-18273375IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-16278375No hitNo description
PROSITE profilePS5086311.335280377IPR003340B3 DNA binding domain
SMARTSM010194.7E-11280377IPR003340B3 DNA binding domain
PfamPF023621.3E-12282375IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-18527630IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-18528629IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.3E-13534631IPR003340B3 DNA binding domain
PROSITE profilePS5086310.785535631IPR003340B3 DNA binding domain
CDDcd100173.93E-16539629No hitNo description
PfamPF023628.7E-11539629IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-21727832IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18728832IPR015300DNA-binding pseudobarrel domain
CDDcd100174.53E-15733831No hitNo description
SMARTSM010199.3E-6735829IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998738834IPR003340B3 DNA binding domain
PfamPF023621.9E-12751826IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MAAKPQLQSG EGSSIWKSST AKIPQPKFFK IILSQHECSS LRIPEDFARR YCKNMLNPVY  60
LEVPTGEVWE VEVVLSQGQI CLGIGWQDFS DFYSISCGHF LMFGYNARSH FNVTIFDLSA  120
SEIEYPYSSA HGIHTPISYS HETHHAPERD QSESDDSVEI LEGIPRSQKP NAIIPDMVEN  180
SVENLDHCPL VQSSKRQRQE GDAEDDVSVD MHIKKMKVEK LREDVASPSF IRKGQKRNKG  240
CRTHKQQSES VYGQHKSVMD KERAVAYQRA KAFKSKNPFI ISFMQPSYVF SPFSLSVALK  300
FARKYFLENY GNLVLRVPGK GRGSWSVKCT TRGTNATVYS GWKAFVLDNK LKCGDACVFE  360
VIKGTRLFID VTIFRAAWST LMHKIVGEVP GGSDSKSNVI KTDNCVPCSQ LKVVHTKKLK  420
QRTGEEHGEG TEIEHSVEIL GHCPLVHGSK RNRPEGEAEG DVSIDLHTKS INVENTQKHV  480
TSPSITRKTK RSGESCRMHK QQSKLVYAMN KTVLDKEMSI AYQRAKAFKS ENPFVIYFMQ  540
PSYVSKPYSL QISLLFAVKY FREKCGNLVL RVPGRGSWPV KYALGKSKSK ICFSWKAFVL  600
DNKLNFGDVC VFELIKGGTK PILDVTIFRA AKSKPMHKID AKLARVSDHK NKTIKTEKSV  660
PCSQHKIFHS KKLNLEKKQK GDSDGFTSKI KEEFSEDTGK HVQQSKSSCK GSAVAKEMVL  720
AYQRAKAFTS ENPFFICLMQ PSYVSSASGP VQLSITLERA RKFFSTRHSD VVLRVSSKKS  780
WAVKCILGTV NAKLSSGWKE FVLDNNLKVG DVCVFERVIS RPKLLFNVII FTSAEGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1424982518141B3 domain-containing transcription factor VRN1
4i1k_B1e-1424982518141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-50HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-50HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798049.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A1U7YFN70.0A0A1U7YFN7_NICSY; putative B3 domain-containing protein Os03g0621600 isoform X1
STRINGXP_009798049.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-36B3 family protein