PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798050.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 836aa    MW: 94184.3 Da    PI: 9.9711
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798050.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-1028117198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+    + ++ + l++p +fa+++ ++  ++  + le ++g++Wev++    ++g++ l+ GW++F +   +  g f++F ++ rs f  +v+
  XP_009798050.1  28 FFKII--LSQHECSSLRIPEDFARRYCKNMLNP--VYLEVPTGEVWEVEV--VLSQGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVT 114
                     66666..444455569**********5454444..***************..899999**************************999999..999 PP

                     EE- CS
              B3  96 vfr 98 
                     +f+
  XP_009798050.1 115 IFD 117
                     987 PP
2B348.81.3e-15283375498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + ps+v++   l++  kfa+++ +++ ++  l++  +   sW+vk+  + ++   +  +GWk Fv +n+Lk gD +vF++++ ++    v++fr
  XP_009798050.1 283 FMQPSYVFSPFSLSVALKFARKYFLENYGNLVLRVPGKGRGSWSVKC--TTRGTNATVYSGWKAFVLDNKLKCGDACVFEVIKGTRLFIDVTIFR 375
                     6889*******************88888887788888888*******..66666777889********************987655556677766 PP
3B341.72e-13538628598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     + ps+v+k   l ++  fa ++  +k ++  l+l+ +   sW vk+   k+++++ ++  Wk Fv +n+L+ gD++vF+l++  ++  l v++fr
  XP_009798050.1 538 MQPSYVSKPYSLQISLLFAVKYFREK-CG-NLVLRVPGRGSWPVKYALGKSKSKICFS--WKAFVLDNKLNFGDVCVFELIKGgTKPILDVTIFR 628
                     67999999999***********7554.43.8***************999999999999..********************976566667777776 PP
4B346.18.9e-15740824793
                     .-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..E CS
              B3   7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelv 93 
                     ps+v++     +l++  + a+++ +   ++ +++l+ +s +sW vk+i   +     l++GWkeFv +n+Lk+gD++vF+++ +r +  l+
  XP_009798050.1 740 PSYVSSAsgpVQLSITLERARKFFST--RHSDVVLRVSSKKSWAVKCIL--GTVNAKLSSGWKEFVLDNNLKVGDVCVFERViSRPK--LL 824
                     44444445556799999999999755..4558***************65..333346***********************5523333..34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-1722119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1624119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-1026117No hitNo description
PROSITE profilePS5086310.72926119IPR003340B3 DNA binding domain
PfamPF023621.9E-728117IPR003340B3 DNA binding domain
SMARTSM010194.9E-729119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-20272376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-18273375IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-16278375No hitNo description
PROSITE profilePS5086311.335280377IPR003340B3 DNA binding domain
SMARTSM010194.7E-11280377IPR003340B3 DNA binding domain
PfamPF023621.3E-12282375IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-18526629IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-18527628IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.3E-13533630IPR003340B3 DNA binding domain
PROSITE profilePS5086310.785534630IPR003340B3 DNA binding domain
CDDcd100173.96E-16538628No hitNo description
PfamPF023628.7E-11538628IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-21726831IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18727831IPR015300DNA-binding pseudobarrel domain
CDDcd100174.57E-15732830No hitNo description
SMARTSM010199.3E-6734828IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998737833IPR003340B3 DNA binding domain
PfamPF023621.9E-12750825IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MAAKPQLQSG EGSSIWKSST AKIPQPKFFK IILSQHECSS LRIPEDFARR YCKNMLNPVY  60
LEVPTGEVWE VEVVLSQGQI CLGIGWQDFS DFYSISCGHF LMFGYNARSH FNVTIFDLSA  120
SEIEYPYSSA HGIHTPISYS HETHHAPERD QSESDDSVEI LEGIPRSQKP NAIIPDMVEN  180
SVENLDHCPL VQSSKRQRQE GDAEDDVSVD MHIKKMKVEK LREDVASPSF IRKGQKRNKG  240
CRTHKQQSES VYGQHKSVMD KERAVAYQRA KAFKSKNPFI ISFMQPSYVF SPFSLSVALK  300
FARKYFLENY GNLVLRVPGK GRGSWSVKCT TRGTNATVYS GWKAFVLDNK LKCGDACVFE  360
VIKGTRLFID VTIFRAAWST LMHKIVGEVP GGSDSKSNVI KTDNCVPCSQ LKVVHTKKLK  420
QRTEEHGEGT EIEHSVEILG HCPLVHGSKR NRPEGEAEGD VSIDLHTKSI NVENTQKHVT  480
SPSITRKTKR SGESCRMHKQ QSKLVYAMNK TVLDKEMSIA YQRAKAFKSE NPFVIYFMQP  540
SYVSKPYSLQ ISLLFAVKYF REKCGNLVLR VPGRGSWPVK YALGKSKSKI CFSWKAFVLD  600
NKLNFGDVCV FELIKGGTKP ILDVTIFRAA KSKPMHKIDA KLARVSDHKN KTIKTEKSVP  660
CSQHKIFHSK KLNLEKKQKG DSDGFTSKIK EEFSEDTGKH VQQSKSSCKG SAVAKEMVLA  720
YQRAKAFTSE NPFFICLMQP SYVSSASGPV QLSITLERAR KFFSTRHSDV VLRVSSKKSW  780
AVKCILGTVN AKLSSGWKEF VLDNNLKVGD VCVFERVISR PKLLFNVIIF TSAEGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1424982418141B3 domain-containing transcription factor VRN1
4i1k_B1e-1424982418141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-50HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-50HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798050.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A1U7YGV50.0A0A1U7YGV5_NICSY; putative B3 domain-containing protein Os03g0621600 isoform X2
STRINGXP_009798049.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-36B3 family protein