PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798092.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26318.3 Da    PI: 4.7034
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-182777656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +ft+eq++ Le++F+ + ++  +++ +LA+ lgL+ rqV +WFqN+Ra++k
  XP_009798092.1 27 RFTDEQVKLLESMFRLETKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 77
                    7*************************************************9 PP
2HD-ZIP_I/II116.91.1e-3725114392
     HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +r+++eqvklLE++F+ e+kLep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y +Lk+++d+l+ + ++L++e+e+L  +l+
  XP_009798092.1  25 GKRFTDEQVKLLESMFRLETKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLENEYIVLKAKFDHLNMQFQSLKTEKEKLLIQLE 114
                     58***********************************************************************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-171581IPR009057Homeodomain-like
PROSITE profilePS5007116.8441979IPR001356Homeobox domain
SMARTSM003893.5E-152183IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-192685IPR009057Homeodomain-like
PfamPF000463.8E-162777IPR001356Homeobox domain
CDDcd000864.44E-132780No hitNo description
PRINTSPR000311.6E-55059IPR000047Helix-turn-helix motif
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PRINTSPR000311.6E-55975IPR000047Helix-turn-helix motif
PfamPF021831.2E-1079120IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEPEESQELE KSKSPNSLKK NTENGKRFTD EQVKLLESMF RLETKLEPRK KLQLARDLGL  60
QPRQVAIWFQ NKRARWKSKQ LENEYIVLKA KFDHLNMQFQ SLKTEKEKLL IQLEILNDQL  120
ENNLARGSRS EDLKDNEMYT SSENGGTDLE LKDSPGCSNA RFDHKRIKED QDDDTAEETD  180
KYFAPKEEAE FWNLEELGDN SLEQWCVGLG SSFNQSCGNS KLWDF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798092.11e-163PREDICTED: homeobox-leucine zipper protein ATHB-7-like
TrEMBLA0A1U7Y1R61e-162A0A1U7Y1R6_NICSY; homeobox-leucine zipper protein ATHB-7-like
STRINGXP_009798092.11e-163(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.16e-35homeobox 7