PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798262.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 424aa    MW: 47988.9 Da    PI: 5.3972
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.52.3e-21239287554
         G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     +Wt eLH++F+eav+qL G+ +  Pk+ilelm+v+gLt+ +v+SHLQk R
  XP_009798262.1 239 EWTLELHAKFLEAVAQL-GEGRCYPKEILELMDVPGLTRMQVASHLQKCR 287
                     7****************.9*****************************98 PP
2Response_reg35.84.3e-13301341106
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     v++vd ++ v   +  +le+++y +v+++  +e a+++l + +  +D++++    p++   +ll +  e +  +  i+v + +++ +a++al++G
  XP_009798262.1  30 VMLVDHDQEVIYEMVDLLESHKY-KVTTVGAAEMAMTMLSKGKerYDVMIINAYSPDLLSTQLLGQAVELD--IISIFVCDDNNPLLAKKALDVG 121
                     89*********************.***************777667************99999988877766..88889999999*********** PP

                     ESEEEESS--HHH CS
    Response_reg  94 akdflsKpfdpee 106
                     a  +l Kp ++e 
  XP_009798262.1 122 AYLYLKKPLQEEM 134
                     ********77654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.2E-1327150No hitNo description
SuperFamilySSF521721.17E-1327153IPR011006CheY-like superfamily
SMARTSM004481.3E-428138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.79129143IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-630133IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.44E-931143No hitNo description
PROSITE profilePS5129411.525229291IPR017930Myb domain
SuperFamilySSF466891.43E-14234287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-20235288IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-18238288IPR006447Myb domain, plants
PfamPF002491.5E-6239286IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSQQEINNQS NEGLLNPMAP YNGMINEVRV MLVDHDQEVI YEMVDLLESH KYKVTTVGAA  60
EMAMTMLSKG KERYDVMIIN AYSPDLLSTQ LLGQAVELDI ISIFVCDDNN PLLAKKALDV  120
GAYLYLKKPL QEEMVKYLWQ FVLKEKLQRE KVKKVLENGE NMIINIGDED ETGENVGDEQ  180
GEKSMANDEE QNNNNEVENS ESNGKYKLRK KRGRKSTKEA NQGDSHSSGK SVKRKVCTEW  240
TLELHAKFLE AVAQLGEGRC YPKEILELMD VPGLTRMQVA SHLQKCRNDN WRAPEERKSS  300
RNSSGQGSSS GSQQRSGHRK FGSMPRIQPN MVTNLQQQQR DQEINQRSPP EFQFPPLNNS  360
SIIARGESST QQEQAYRPQL PYVEPQYLSI GSPFNNPNFT QNSAGGFVQQ QQNGPFVGMA  420
WVSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798262.10.0PREDICTED: two-component response regulator ARR2-like
TrEMBLA0A1U7Y2990.0A0A1U7Y299_NICSY; two-component response regulator ARR2-like
STRINGXP_009798262.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.18e-31response regulator 1