PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798603.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 390aa    MW: 45748.1 Da    PI: 6.5163
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798603.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix721.1e-22117198179
        trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstc 79 
                     +Wt+++v++Li+a+++++e++ ++    kk++W+++s++m+erg ++sp+qC++k+++lnk++k+++++ +++t + ++++ 
  XP_009798603.1 117 KWTDEMVKLLITAVSYIGEDVWSNGifPKKGKWRAISNAMAERGHHVSPQQCEDKFNDLNKKFKRLNDILGRGTaCCVVENP 198
                     7*******************99876569*******************************************99535555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-21115229No hitNo description
PROSITE profilePS500906.202115176IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.7E-4115176IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MLNPSVYQLT FCCFCFRSMQ VNHQQSDSPN QGSGDLQHAL EGAASFGFSN MHDMNQQVLS  60
LDAIETSRLD VYEAYNERSD DVEEVTVRRE EKPPVVYRRT RWKMNKEKQP VVYSRMKWTD  120
EMVKLLITAV SYIGEDVWSN GIFPKKGKWR AISNAMAERG HHVSPQQCED KFNDLNKKFK  180
RLNDILGRGT ACCVVENPGL MEMMDLTHDA QEEVKKLLSS KQLFYQELCS YNNQNRLFLP  240
DDRELQRSVL LALKRKDRYE PEYVVQDMSA KRKIVGEERV SNVVCAFINS DCNVLNPNSN  300
GIHDYTNNEE AETLQNEQQI MHQLLQLEEQ KLQIKAQILE LEKQRVKCLR FRRREDRELQ  360
ELKLENKAMM LENKRMELQL KRCETSLQTE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798603.10.0PREDICTED: uncharacterized protein LOC104244809 isoform X1
TrEMBLA0A1U7Y6470.0A0A1U7Y647_NICSY; uncharacterized protein LOC104244809 isoform X1
STRINGXP_009798603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125851620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.12e-67