PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798604.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 372aa    MW: 43606.5 Da    PI: 6.3336
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.19.8e-2399180179
        trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstc 79 
                     +Wt+++v++Li+a+++++e++ ++    kk++W+++s++m+erg ++sp+qC++k+++lnk++k+++++ +++t + ++++ 
  XP_009798604.1  99 KWTDEMVKLLITAVSYIGEDVWSNGifPKKGKWRAISNAMAERGHHVSPQQCEDKFNDLNKKFKRLNDILGRGTaCCVVENP 180
                     7*******************99876569*******************************************99535555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.20297158IPR017877Myb-like domain
PfamPF138371.6E-2197211No hitNo description
Gene3DG3DSA:1.10.10.609.0E-497158IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MQVNHQQSDS PNQGSGDLQH ALEGAASFGF SNMHDMNQQV LSLDAIETSR LDVYEAYNER  60
SDDVEEVTVR REEKPPVVYR RTRWKMNKEK QPVVYSRMKW TDEMVKLLIT AVSYIGEDVW  120
SNGIFPKKGK WRAISNAMAE RGHHVSPQQC EDKFNDLNKK FKRLNDILGR GTACCVVENP  180
GLMEMMDLTH DAQEEVKKLL SSKQLFYQEL CSYNNQNRLF LPDDRELQRS VLLALKRKDR  240
YEPEYVVQDM SAKRKIVGEE RVSNVVCAFI NSDCNVLNPN SNGIHDYTNN EEAETLQNEQ  300
QIMHQLLQLE EQKLQIKAQI LELEKQRVKC LRFRRREDRE LQELKLENKA MMLENKRMEL  360
QLKRCETSLQ TE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798604.10.0PREDICTED: uncharacterized protein LOC104244809 isoform X2
RefseqXP_009798605.10.0PREDICTED: uncharacterized protein LOC104244809 isoform X2
RefseqXP_009798606.10.0PREDICTED: uncharacterized protein LOC104244809 isoform X2
RefseqXP_009798607.10.0PREDICTED: uncharacterized protein LOC104244809 isoform X2
RefseqXP_009798608.10.0PREDICTED: uncharacterized protein LOC104244809 isoform X2
TrEMBLA0A1U7Y3A20.0A0A1U7Y3A2_NICSY; uncharacterized protein LOC104244809 isoform X2
STRINGXP_009798603.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-67