PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798816.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 207aa    MW: 23759.6 Da    PI: 9.6724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798816.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08108148954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR++i +++  L++l+P       +K++ a++L +Av+Y+k L
  XP_009798816.1 108 ARHRREKISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 148
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.35899148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-14100158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-9101153No hitNo description
SuperFamilySSF474592.22E-14102159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-6109148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDLHDITQSI NNIEMTQILP IHNSNYMMTT SPLSLSFMSN SIDEHNTPHL LSMHDETLDI  60
EKRSSMDAMR EMVFRMAMMQ PIHIDPESVK PPKRKNAKIS KDPQSVAARH RREKISERIR  120
ILQRLVPGGT KMDTASMLDE AVHYVKFLKK QLKSLEQAAV NRPMVSGFSP KLMAQPVDYL  180
SSFRSCQTPQ LMSSNVQMLY KLSEVKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798816.11e-152PREDICTED: transcription factor HEC2-like
TrEMBLA0A1U7YA471e-150A0A1U7YA47_NICSY; transcription factor HEC2-like
STRINGXP_009798816.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.17e-48bHLH family protein