PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009799083.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 285aa MW: 31977.3 Da PI: 4.3042

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009799083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	1e-37	22	80	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC s ntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rk+++s+ XP_009799083.1 22 HAPNCPRCASINTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKSRRSR 80 6779***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	8	73	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-32	23	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MLAFPSRPMI MMERNRKSNV EHAPNCPRCA SINTKFCYYN NYSLSQPRYF CKACRRYWTK 60 GGSLRNVPVG GGCRKSRRSR STRKDDNNLL MPNPALSGNE AAGADIDLAD VFAKYVNQGT 120 TNDHDQDNIL QESPLANQDY CSIGASLSNS PSLDSLVNPS SFENESQVDE TIIMGNYQDY 180 PCGFLQEEQI QGGGSIHEVS GQDFLDFNPS SFVEMQAMLG DEIMGQGEEF DYNTSLAWQP 240 MMQFQEFGSI LEDDDQLKIS TENLDSHNNY GSSFDLTSYE IVTRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799083.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
Swissprot	Q9SVC5	5e-40	DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBL	A0A1U7Y7J5	0.0	A0A1U7Y7J5_NICSY; dof zinc finger protein DOF2.4-like
STRING	XP_009799083.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-36	Dof family protein