PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799324.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 353aa    MW: 39994.9 Da    PI: 4.6619
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35361272102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye++ed++++ +isws+  nsf+v+d+++f++++Lpk+Fkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+ll++
  XP_009799324.1  36 FLSKTYEMVEDSSTDAVISWSRARNSFIVWDSHKFSTTLLPKHFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKT 121
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_009799324.1 122 IKRRRN 127
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-3432125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5932125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3732125IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-183659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-188799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDEEVGVKRE EEGVGTAVTA PPLPMEGLHD VGPPPFLSKT YEMVEDSSTD AVISWSRARN  60
SFIVWDSHKF STTLLPKHFK HSNFSSFIRQ LNTYGFRKVD PDRWEFANEG FLGGQKHLLK  120
TIKRRRNVGQ SMNQQGSGPC IEIGYYGMEE ELERLKRDKN LLRTEIVKLR QQQQSTRNQI  180
IAMGEKIEST ERKQEQMMSF LAKIFSNPTF LQQYLDKCVQ RKDKQRIEVG QKRRLTMTPS  240
SENLQDLVSV AVGSDQPMNY STRDRETELT KMGSDMEILF SAALDNESSS NARSASVVTA  300
SATDMDPVPE NIWEELLGED LISGDGAEEV LVIDQPELDV EVEDLVGTTS EWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-243412527129Heat shock factor protein 1
5d5v_B6e-243412527129Heat shock factor protein 1
5d5v_D6e-243412527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799324.10.0PREDICTED: heat shock factor protein HSF30 isoform X2
SwissprotP411520.0HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A1U7YJB20.0A0A1U7YJB2_NICSY; heat shock factor protein HSF30 isoform X2
STRINGXP_009799323.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-117heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]