PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799396.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 386aa    MW: 44049 Da    PI: 4.5354
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.7e-1353141188
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k l   dv +s+ +++ kk ae+h   + + esk+l + d +g+   +++ +r + g y+l++GW+++ ++++L+ gD+++ + ++++
  XP_009799396.1  53 FCKLLCETDVRESCSVSIEKKNAEDHfpCLAPGESKMLEFADCRGNNVAMEF-VRTNFGDYYLRSGWERYRDEHKLEHGDVLTVYKIEKQ 141
                     8999************************66778999****************.6888899***********************9955433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1649149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-1449150IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-1153149No hitNo description
PfamPF023627.4E-1053147IPR003340B3 DNA binding domain
PROSITE profilePS508639.30553152IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-4177278IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNGEDPEEVE EKQQEVENGS RKQKSTSVSS SGENDSLQEN VIEIPLEYNN IVFCKLLCET  60
DVRESCSVSI EKKNAEDHFP CLAPGESKML EFADCRGNNV AMEFVRTNFG DYYLRSGWER  120
YRDEHKLEHG DVLTVYKIEK QNEYFYIIDC NKLTPEDVQD NVQLVITKLI ATLQDPNASI  180
VEEPVVAKNL RYKDLYENSN GIKLELPKKE VEENLHDLPL PQVGGQVILP LFDPIGKEVI  240
QMELVHTKQD EYYFGGRGRE WGEYAAKHGL LIFDTVFVNK VTVNRDELSP SAECIWKKII  300
DQAGKLDDQV VNNSYYYQIS YQLRSVKSNK KPKHELGQTE NTTSAPSSTT TTNAGNSNNR  360
KGKGVAIPQS EPEYDSDDAY WLSYRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799396.10.0PREDICTED: uncharacterized protein LOC104245480
TrEMBLA0A1U7YBR90.0A0A1U7YBR9_NICSY; uncharacterized protein LOC104245480
STRINGXP_009799396.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1705534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-06related to ABI3/VP1 2