PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009799429.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 214aa MW: 24118.4 Da PI: 7.6595

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009799429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	199	1.9e-61	6	166	2	165
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees 91 ++f+ + +CyvqC++C+til+vsvP +sl k+vtvrCGhCts+lsvnl+k+s +l a ++ ++l+v++e+++ n+++ +s XP_009799429.1 6 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKIVTVRCGHCTSILSVNLMKTSlvplHLFA--------SLNQSEQKLEVDKEDIDANKKSVDS 92 789999*********************97369************999833322333........3344678899999999999999999 PP YABBY 92 astsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 + + v+s+ +e++ e+v v++ v++PPekrqr+Psayn+fikeei+r+k+ P+++h++afs+aaknWahfP+ XP_009799429.1 93 EISFVASSD-EEDQIENVVPVYQvVNKPPEKRQRAPSAYNCFIKEEIKRLKTIYPNMTHKQAFSTAAKNWAHFPP 166 999999987.555555555577769**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-57	11	167	IPR006780	YABBY protein
SuperFamily	SSF47095	2.49E-8	114	168	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.4E-5	117	168	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MSALNHLFEL QDTICYVQCG YCTTILLVSV PCSSLCNKIV TVRCGHCTSI LSVNLMKTSL 60 VPLHLFASLN QSEQKLEVDK EDIDANKKSV DSEISFVASS DEEDQIENVV PVYQVVNKPP 120 EKRQRAPSAY NCFIKEEIKR LKTIYPNMTH KQAFSTAAKN WAHFPPSQHR GDRESCSLGD 180 RKMPKISAAR NSQVPRDCNG FFERKDSNMT PSNE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799429.1	1e-160	PREDICTED: axial regulator YABBY 4 isoform X2
Refseq	XP_016476193.1	1e-160	PREDICTED: axial regulator YABBY 4-like isoform X2
Swissprot	Q9LDT3	7e-64	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1S4AID4	1e-159	A0A1S4AID4_TOBAC; axial regulator YABBY 4-like isoform X2
TrEMBL	A0A1U7YJL7	1e-159	A0A1U7YJL7_NICSY; axial regulator YABBY 4 isoform X2
STRING	XP_009799428.1	1e-158	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	3e-66	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]