PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799706.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 418aa    MW: 48628.4 Da    PI: 6.2076
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799706.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.53.5e-2393188186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt+q+v++Li+a+++++e+  ++           kk++W++vsk+m+er   +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d l
  XP_009799706.1  93 KWTDQMVRLLITAVSYIGEETAAEYggrrkcsnlHKKGKWKSVSKVMAERDHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPALLDVL 187
                     7**************999988864223344567799********************************************669999999998887 PP

        trihelix  86 e 86 
                     +
  XP_009799706.1 188 D 188
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.7E-2291214No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MMPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT IGSMQQDCNQ NISLADQGKS  60
ASDEDEPSFT EDAADGLNDL NRGKKATPWQ RVKWTDQMVR LLITAVSYIG EETAAEYGGR  120
RKCSNLHKKG KWKSVSKVMA ERDHFVSPQQ CEDKFNDLNK RYKRLNEILG RGTSCEVVEN  180
PALLDVLDHV SEKGKEEVRK ILSSKHLHYE EMCSYHNGNR LHLPPDLELQ RSLRLALTSR  240
DEHDDNDVRK HLQDDNDDDD HETHLVEDQD EYEENHSLPR EHRLHGMSGG FSKRIKQCQG  300
HEIVTFGNFL TTVDGNRTFI SQPQKANTDA NQMFSECNKA DILQKQWMDH RSFQLEEQKL  360
QIQAQMLELE KERFNWKRFS RKKDIELEMM RMENERIKLE NECMALELKR KEMLAENV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799706.10.0PREDICTED: uncharacterized protein LOC104245746 isoform X1
TrEMBLA0A1U7YCM20.0A0A1U7YCM2_NICSY; uncharacterized protein LOC104245746 isoform X1
STRINGXP_009799706.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-148sequence-specific DNA binding transcription factors